Description | Background | 1. Datasets to be used in the Epidemiological Report package | 1.1. Disease dataset specification | 1.2. Report parameters dataset specification | 1.3. Member States correspondence table dataset | 2. How to generate the Epidemiological Report in Microsoft Word format | 2.1. External disease dataset | 2.2. Word template | 2.3. Word bookmarks | 3. How to generate each epidemiological outputs independently | 3.1. Table: distribution of cases by Member State | 3.2. Seasonality plot: distribution of cases by month | 3.3. Trend plot: trend and number of cases by month | 3.4. Maps: distribution of cases by Member State | 3.5. Age and gender bar graph
Package: EpiReport 1.0.4
Lore Merdrignac
EpiReport: Epidemiological Report
Drafting an epidemiological report in 'Microsoft Word' format for a given disease, similar to the Annual Epidemiological Reports published by the European Centre for Disease Prevention and Control. Through standalone functions, it is specifically designed to generate each disease specific output presented in these reports and includes: - Table with the distribution of cases by Member State over the last five years; - Seasonality plot with the distribution of cases at the European Union / European Economic Area level, by month, over the past five years; - Trend plot with the trend and number of cases at the European Union / European Economic Area level, by month, over the past five years; - Age and gender bar graph with the distribution of cases at the European Union / European Economic Area level. Two types of datasets can be used: - The default dataset of dengue 2015-2019 data; - Any dataset specified as described in the vignette.
Authors:
EpiReport_1.0.4.tar.gz
EpiReport_1.0.4.zip(r-4.7-any)EpiReport_1.0.4.zip(r-4.6-any)EpiReport_1.0.4.zip(r-4.5-any)
EpiReport_1.0.4.tgz(r-4.6-any)EpiReport_1.0.4.tgz(r-4.5-any)
EpiReport_1.0.4.tar.gz(r-4.7-any)EpiReport_1.0.4.tar.gz(r-4.6-any)
EpiReport_1.0.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
EpiReport/json (API)
| # Install 'EpiReport' in R: |
| install.packages('EpiReport', repos = c('https://epiconcept-paris.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/epiconcept-paris/epireport/issues
Pkgdown/docs site:https://epiconcept-paris.github.io
Datasets:
- AERparams - Dataset describing the parameters for the epidemiological report production
- DENGUE2019 - Dataset including Dengue data for 2015-2019
- MSCode - Dataset correspondence table between country names and country code
- SALM2016 - Dataset including Salmonellosis data for 2012-2016
Last updated from:4e21734ea6. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 154 | ||
| source / vignettes | OK | 265 | ||
| linux-release-x86_64 | OK | 164 | ||
| macos-release-arm64 | OK | 151 | ||
| macos-oldrel-arm64 | OK | 79 | ||
| windows-devel | OK | 94 | ||
| windows-release | OK | 111 | ||
| windows-oldrel | OK | 91 | ||
| wasm-release | OK | 144 |
Exports:body_replace_gg_at_bkmcleanECDCTablecleanMeasureCodeEcdcColorsfilterDiseasegetAERgetAgeGendergetMapgetSeasongetTableByMSgetTemplategetTrendincludeMaporderQuasinumplotAgeplotAgeGenderplotBarplotBarGroupedplotBarGroupedHplotBarHplotPieplotSeasonalityplotTSplotTS12MAvgplotTSGroupedpreviewMapshapeECDCFlexTabletoCapTitle
Dependencies:askpassbase64encbslibcachemclicpp11data.tabledigestdplyrevaluatefarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsggplot2gluegtablehighrhtmltoolsisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrmemoisemimeofficeropensslpillarpkgconfigpngpurrrR6raggrappdirsRColorBrewerRcpprlangrmarkdownS7sassscalesstringistringrsyssystemfontstextshapingtibbletidyrtidyselecttinytexutf8uuidvctrsviridisLitewithrxfunxml2yamlzipzoo
