Package: ervissexplore 0.1.0

Yohann Mansiaux

ervissexplore: Retrieve and Explore ERVISS Respiratory Virus Surveillance Data

Provides easy access to ERVISS (European Respiratory Virus Surveillance Summary) data from the EU-ECDC <https://github.com/EU-ECDC/Respiratory_viruses_weekly_data>. Enables retrieval, filtering, and optional visualization of data across European countries. Data is fetched directly from the EU-ECDC Respiratory Viruses Weekly Data repository, with support for both latest data and historical snapshots for reproducible analyses.

Authors:Yohann Mansiaux [aut, cre]

ervissexplore_0.1.0.tar.gz
ervissexplore_0.1.0.zip(r-4.7)ervissexplore_0.1.0.zip(r-4.6)ervissexplore_0.1.0.zip(r-4.5)
ervissexplore_0.1.0.tgz(r-4.6-any)ervissexplore_0.1.0.tgz(r-4.5-any)
ervissexplore_0.1.0.tar.gz(r-4.7-any)ervissexplore_0.1.0.tar.gz(r-4.6-any)
ervissexplore_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ervissexplore/json (API)

# Install 'ervissexplore' in R:
install.packages('ervissexplore', repos = c('https://epiconcept-paris.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/epiconcept-paris/ervissexplore/issues

Pkgdown/docs site:https://epiconcept-paris.github.io

On CRAN:

Conda:

4.70 score 6 scripts 215 downloads 32 exports 18 dependencies

Last updated from:f67271b2a8. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK143
source / vignettesOK185
linux-release-x86_64OK141
macos-release-arm64OK101
macos-oldrel-arm64OK107
windows-develOK99
windows-releaseOK108
windows-oldrelOK89
wasm-releaseOK105

Exports:get_erviss_dataget_erviss_urlget_erviss_variantsget_erviss_variants_urlget_ili_ari_ratesget_ili_ari_rates_urlget_nonsentinel_severityget_nonsentinel_severity_urlget_nonsentinel_testsget_nonsentinel_tests_urlget_sari_positivityget_sari_positivity_urlget_sari_ratesget_sari_rates_urlget_sentineltests_positivityget_sentineltests_positivity_urlplot_erviss_dataplot_erviss_positivityplot_erviss_variantsplot_ili_ari_ratesplot_nonsentinel_severityplot_nonsentinel_testsplot_sari_positivityplot_sari_ratesquick_plot_erviss_dataquick_plot_erviss_positivityquick_plot_erviss_variantsquick_plot_ili_ari_ratesquick_plot_nonsentinel_severityquick_plot_nonsentinel_testsquick_plot_sari_positivityquick_plot_sari_rates

Dependencies:clicpp11data.tablefarverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr

Visualization
Plotting is a bonus, not the core feature | Built-in plot functions | Sentinel test positivity | SARS-CoV-2 variants | ILI/ARI consultation rates | SARI rates | SARI virological data | Non-sentinel severity | Non-sentinel tests/detections | Quick plot shortcuts | Using the generic plot_erviss_data() | Customizing plots | Changing the theme | Modifying axes | Adding titles and annotations | Changing colours | Building your own plots from scratch
Rendered fromvisualization.Rmdusingknitr::rmarkdown

Last update: 2026-02-09
Started: 2026-02-06

Fetching ERVISS Data
Introduction | Available data sources | Sentinel test positivity | SARS-CoV-2 variants | ILI/ARI consultation rates | SARI rates | SARI virological data | Non-sentinel severity | Non-sentinel tests and detections | Using the generic function | Historical snapshots | URL helpers | Using a local CSV file | Analyzing the data
Rendered fromfetching-data.Rmdusingknitr::rmarkdown

Last update: 2026-02-06
Started: 2026-02-06

Readme and manuals

Help Manual

Help pageTopics
Get ERVISS dataget_erviss_data
Get ERVISS data URLget_erviss_url
Get ERVISS variants dataget_erviss_variants
Get ERVISS variants data URLget_erviss_variants_url
Get ERVISS ILI/ARI consultation rates dataget_ili_ari_rates
Get ERVISS ILI/ARI rates data URLget_ili_ari_rates_url
Get ERVISS non-sentinel severity dataget_nonsentinel_severity
Get ERVISS non-sentinel severity data URLget_nonsentinel_severity_url
Get ERVISS non-sentinel tests/detections dataget_nonsentinel_tests
Get ERVISS non-sentinel tests/detections data URLget_nonsentinel_tests_url
Get ERVISS SARI tests/detections/positivity dataget_sari_positivity
Get ERVISS SARI tests/detections/positivity data URLget_sari_positivity_url
Get ERVISS SARI rates dataget_sari_rates
Get ERVISS SARI rates data URLget_sari_rates_url
Get ERVISS sentinel tests dataget_sentineltests_positivity
Get ERVISS positivity data URLget_sentineltests_positivity_url
Plot ERVISS dataplot_erviss_data
Plot ERVISS positivity dataplot_erviss_positivity
Plot ERVISS variants dataplot_erviss_variants
Plot ERVISS ILI/ARI consultation rates dataplot_ili_ari_rates
Plot ERVISS non-sentinel severity dataplot_nonsentinel_severity
Plot ERVISS non-sentinel tests/detections dataplot_nonsentinel_tests
Plot ERVISS SARI positivity dataplot_sari_positivity
Plot ERVISS SARI rates dataplot_sari_rates
Quick plot of ERVISS dataquick_plot_erviss_data
Quick plot of ERVISS positivity dataquick_plot_erviss_positivity
Quick plot of ERVISS variants dataquick_plot_erviss_variants
Quick plot of ERVISS ILI/ARI consultation rates dataquick_plot_ili_ari_rates
Quick plot of ERVISS non-sentinel severity dataquick_plot_nonsentinel_severity
Quick plot of ERVISS non-sentinel tests/detections dataquick_plot_nonsentinel_tests
Quick plot of ERVISS SARI positivity dataquick_plot_sari_positivity
Quick plot of ERVISS SARI rates dataquick_plot_sari_rates